Revision as of 15:27, 12 March 2014

This is a list of the key papers for the semester.

This will be updated throughout the semester to record the papers discussed and to provide a quick reference source for anyone looking back on the class.

• iGEM registry/parts:
  1. T. Knight, “Idempotent Vector Design for Standard Assembly of Biobricks” (MIT, Cambridge, MA, 2003). [Knight2003]

• BioBricks:
  Error fetching PMID 18612302:
  2. Error fetching PMID 18612302: [Endy2008]

• CAD systems:
  Error fetching PMID 19874625:
  3. Error fetching PMID 19874625: [Sauro2009]

• Gibson assembly:
  Error fetching PMID 19363495:
  4. Error fetching PMID 19363495: [Smith2009]

• Genome synthesis:
  Error fetching PMID 20488990:
  5. Error fetching PMID 20488990: [Venter2010]

• GFP and Ancestral Sequence Reconstruction: [combined for time and similarity]
  Error fetching PMID 19793832:
  6. Error fetching PMID 19793832: [Matz2010]

• Link to Tinker Cell

• Directed Protein Evolution:
  Error fetching PMID 21478873:
  7. Error fetching PMID 21478873: [Liu2011]

• Biocontainment and Selections:
  Error fetching PMID 23662731:
  8. Error fetching PMID 23662731: [Guo2013]

• Reading for riboswitches (read before class on March 3rd)

• Non-canonical Nucleotides:
  Error fetching PMID 17074747:
  9. Error fetching PMID 17074747: [Benner2006]

• Stochastic Gene Expression:
  Error fetching PMID 12183631:
  10. Error fetching PMID 12183631: [Swain2002]