Difference between revisions of "CH391L/S14/KeyPapers"

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(This is a list of the key papers for the semester.)
(This is a list of the key papers for the semester.)
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This will be updated throughout the semester to record the papers discussed and to provide a quick reference source for anyone looking back on the class.
 
This will be updated throughout the semester to record the papers discussed and to provide a quick reference source for anyone looking back on the class.
  
 
+
===For Week III, February 3rd 2014===
 
*'''iGEM registry/parts:''' <biblio> Knight2003 T. Knight, “Idempotent Vector Design for Standard Assembly of Biobricks” (MIT, Cambridge, MA, 2003). </biblio>  
 
*'''iGEM registry/parts:''' <biblio> Knight2003 T. Knight, “Idempotent Vector Design for Standard Assembly of Biobricks” (MIT, Cambridge, MA, 2003). </biblio>  
 
*'''BioBricks:''' <biblio>#Endy2008 pmid=18612302</biblio>
 
*'''BioBricks:''' <biblio>#Endy2008 pmid=18612302</biblio>
 
*'''CAD systems:'''<biblio>#Sauro2009 pmid=19874625</biblio>
 
*'''CAD systems:'''<biblio>#Sauro2009 pmid=19874625</biblio>
 +
 +
 +
===For Week IV, February 10th 2014===
 
*'''Gibson assembly:'''<biblio>#Smith2009 pmid=19363495</biblio>
 
*'''Gibson assembly:'''<biblio>#Smith2009 pmid=19363495</biblio>
 
*'''Genome synthesis:'''<biblio>#Venter2010 pmid=20488990</biblio>
 
*'''Genome synthesis:'''<biblio>#Venter2010 pmid=20488990</biblio>
  
 +
 +
===For Week V, February 17th 2014===
 
*'''GFP  and    Ancestral Sequence Reconstruction:''' [combined for time and similarity] <biblio>#Matz2010 pmid=19793832</biblio>
 
*'''GFP  and    Ancestral Sequence Reconstruction:''' [combined for time and similarity] <biblio>#Matz2010 pmid=19793832</biblio>
  
  
 +
===For Week VI, February 24th 2014===
 
*'''Link to [http://www.tinkercell.com/downloads-2  Tinker Cell]'''
 
*'''Link to [http://www.tinkercell.com/downloads-2  Tinker Cell]'''
  
  
 +
===For Week VII, March 3rd 2014===
 
*'''Directed Protein Evolution:''' <biblio>#Liu2011 pmid=21478873</biblio>
 
*'''Directed Protein Evolution:''' <biblio>#Liu2011 pmid=21478873</biblio>
  
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===For Week VIII, March 17th 2014===
 
*'''Non-canonical Nucleotides:'''<biblio>#Benner2006 pmid=17074747</biblio>
 
*'''Non-canonical Nucleotides:'''<biblio>#Benner2006 pmid=17074747</biblio>
  
 
*'''Stochastic Gene Expression:'''<biblio>#Swain2002 pmid=12183631</biblio>
 
*'''Stochastic Gene Expression:'''<biblio>#Swain2002 pmid=12183631</biblio>
  
 +
 +
===For Week IX, March 24th 2014===
 
*'''Motility and Taxis'''<biblio>#Voigt2006 pmid=16330045</biblio>
 
*'''Motility and Taxis'''<biblio>#Voigt2006 pmid=16330045</biblio>

Revision as of 17:59, 17 March 2014

Contents

This is a list of the key papers for the semester.

This will be updated throughout the semester to record the papers discussed and to provide a quick reference source for anyone looking back on the class.

For Week III, February 3rd 2014

  • iGEM registry/parts:
    1. T. Knight, “Idempotent Vector Design for Standard Assembly of Biobricks” (MIT, Cambridge, MA, 2003). [Knight2003]
  • BioBricks:
    Error fetching PMID 18612302:
    1. Error fetching PMID 18612302: [Endy2008]
  • CAD systems:
    Error fetching PMID 19874625:
    1. Error fetching PMID 19874625: [Sauro2009]


For Week IV, February 10th 2014

  • Gibson assembly:
    Error fetching PMID 19363495:
    1. Error fetching PMID 19363495: [Smith2009]
  • Genome synthesis:
    Error fetching PMID 20488990:
    1. Error fetching PMID 20488990: [Venter2010]


For Week V, February 17th 2014

  • GFP and Ancestral Sequence Reconstruction: [combined for time and similarity]
    Error fetching PMID 19793832:
    1. Error fetching PMID 19793832: [Matz2010]


For Week VI, February 24th 2014


For Week VII, March 3rd 2014

  • Directed Protein Evolution:
    Error fetching PMID 21478873:
    1. Error fetching PMID 21478873: [Liu2011]
  • Biocontainment and Selections:
    Error fetching PMID 23662731:
    1. Error fetching PMID 23662731: [Guo2013]


For Week VIII, March 17th 2014

  • Non-canonical Nucleotides:
    Error fetching PMID 17074747:
    1. Error fetching PMID 17074747: [Benner2006]
  • Stochastic Gene Expression:
    Error fetching PMID 12183631:
    1. Error fetching PMID 12183631: [Swain2002]


For Week IX, March 24th 2014

  • Motility and Taxis
    Error fetching PMID 16330045:
    1. Error fetching PMID 16330045: [Voigt2006]