CH391L/S14/KeyPapers

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Contents

This is a list of the key papers for the semester.

This will be updated throughout the semester to record the papers discussed and to provide a quick reference source for anyone looking back on the class.

For Week III, February 3rd 2014

  • iGEM registry/parts:
    1. T. Knight, “Idempotent Vector Design for Standard Assembly of Biobricks” (MIT, Cambridge, MA, 2003). [Knight2003]
  • BioBricks:
    Error fetching PMID 18612302:
    1. Error fetching PMID 18612302: [Endy2008]
  • CAD systems:
    Error fetching PMID 19874625:
    1. Error fetching PMID 19874625: [Sauro2009]


For Week IV, February 10th 2014

  • Gibson assembly:
    Error fetching PMID 19363495:
    1. Error fetching PMID 19363495: [Smith2009]
  • Genome synthesis:
    Error fetching PMID 20488990:
    1. Error fetching PMID 20488990: [Venter2010]


For Week V, February 17th 2014

  • GFP and Ancestral Sequence Reconstruction: [combined for time and similarity]
    Error fetching PMID 19793832:
    1. Error fetching PMID 19793832: [Matz2010]


For Week VI, February 24th 2014


For Week VII, March 3rd 2014

  • Directed Protein Evolution:
    Error fetching PMID 21478873:
    1. Error fetching PMID 21478873: [Liu2011]
  • Biocontainment and Selections:
    Error fetching PMID 23662731:
    1. Error fetching PMID 23662731: [Guo2013]


For Week VIII, March 17th 2014

  • Non-canonical Nucleotides:
    Error fetching PMID 17074747:
    1. Error fetching PMID 17074747: [Benner2006]
  • Stochastic Gene Expression:
    Error fetching PMID 12183631:
    1. Error fetching PMID 12183631: [Swain2002]


For Week IX, March 24th 2014

  • Motility and Taxis
    Error fetching PMID 16330045:
    1. Error fetching PMID 16330045: [Voigt2006]
  • Optogenetics - Review article
    Error fetching PMID 21255749:
    1. Error fetching PMID 21255749: [LaLumiere2011]
  • Quorum Sensing
    Error fetching PMID 20534565:
    1. Error fetching PMID 20534565: [March2010]

For Week X, March 31st 2014

  • Cell Counting and Memory
    Error fetching PMID 19478183:
    1. Error fetching PMID 19478183: [Collins2009]
  • Oscillations
    Error fetching PMID 18971928:
    1. Error fetching PMID 18971928: [Hasty2008]

For Week XI, April 7th 2014

  • MAGE
    Error fetching PMID 21764749:
    1. Error fetching PMID 21764749: [Church2011]
  • CRISPR
    Error fetching PMID 23287722:
    1. Error fetching PMID 23287722: [Church2013]
  • GMO article from the NY Times. Read the entirety of this article. We will have a discussion relating to this and other GMO topics in class [1]


  • Amber-less E. coli [Led by Mike Hammerling. Look over the paper, but you do not need to understand everything
    Error fetching PMID 24136966:
    1. Error fetching PMID 24136966: [Isaacs2013]

For Week XII, April 14th 2014

  • small RNAs
    Error fetching PMID 23334451:
    1. Error fetching PMID 23334451: [Lee2013]


For Week XIII, April 21st 2014

  • Bioremediation
    Error fetching PMID 24140537:
    1. Error fetching PMID 24140537: [Apte2013]


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